Reassemblable quasi-chip free-flow electrophoresis with simple heating dispersion for rapid micropreparation of trypsin in crude porcine pancreatin

An increasing number of small biosamples (e.g. proteins and enzymes) need micropreparation in lab. However, neither large-scale free-flow electrophoresis (LS-FFE) nor chip FFE (C-FFE) could fit the growing demands. Herein, a simple quasi-chip FFE (QC-FFE) was constructed. In contrast to C-FFE, the features of QC-FFE are as follows: (i) its separation chamber is reassemblable and rewashable avoiding discard of C-FFE due to blockage of solute precipitation in chamber; (ii) its chamber size is 45 mm × 30 mm × (80-500) μm (108-654 μL volume) having function of micropreparation; (iii) there are up to 16 outlets in QC-FFE bestowing fine fraction for micropurification. The QC-FFE was used for the micropurification of model enzyme of self-digestible trypsin in crude pancreatin. Under the given conditions, the purification factor of enzyme was 11.7, the specific activity reached 6236 U/mg, the run time for 19 μL sample purification was 45 s and the throughput of trypsin was 3.34 mg/h, and the yield of pure trypsin was 55.2%. All of the results show the feasibility of enzyme micropreparation via QC-FFE. The developed device and procedure have potential use to other micropurification of protein or peptide sample.     

Influence of soluble polymer polyvinylpyrrolidone on separation of small peptides and amino acids by microchip-based capillary electrophoresis

In microchip-based capillary electrophoresis, the resolution and separation efficiency of small peptides and amino acids can be noticeably improved by adding a low molecular weight (30,000) soluble polymer additive, polyvinypyrrolidone in the separation medium. Several separation conditions such as injection time and electrophoretic buffer have been investigated and optimized. Using an electro-stacking scheme, the resolution and separation efficiency of small peptides and amino acids can be enhanced significantly. Under the optimal conditions, the separation of fluorescein isothiocyanate Isomer I-labeled small peptides and amino acids was successfully achieved within 100 s.     

A micropillar-integrated smart microfluidic device for specific capture and sorting of cells

An integrated smart microfluidic device consisting of nickel micropillars, microvalves, and microchannels was developed for specific capture and sorting of cells. A regular hexagonal array of nickel micropillars was integrated on the bottom of a microchannel by standard photolithography, which can generate strong induced magnetic field gradients under an external magnetic field to efficiently trap superparamagnetic beads (SPMBs) in a flowing stream, forming a bed with sufficient magnetic beads as a capture zone. Fluids could be manipulated by programmed controlling the integrated air-pressure-actuated microvalves, based on which in situ bio-functionalization of SPMBs trapped in the capture zone was realized by covalent attachment of specific proteins directly to their surface on the integrated microfluidic device. In this case, only small volumes of protein solutions (62.5 nL in the capture zone; 375 nL in total volume needed to fill the device from inlet A to the intersection of outlet channels F and G) can meet the need for protein! The newly designed microfluidic device reduced greatly chemical and biological reagent consumption and simplified drastically tedious manual handling. Based on the specific interaction between wheat germ agglutinin (WGA) and N-acetylglucosamine on the cell membrane, A549 cancer cells were effectively captured and sorted on the microfluidic device. Capture efficiency ranged from 62 to 74%. The integrated microfluidic device provides a reliable technique for cell sorting.     

Deep tunneling dominates the biologically important hydride transfer reaction from NADH to FMN in morphinone reductase

The temperature dependence of the primary kinetic isotope effect (KIE), combined temperature-pressure studies of the primary KIE, and studies of the alpha-secondary KIE previously led us to infer that hydride transfer from nicotinamide adenine dinucleotide to flavin mononucleotide in morphinone reductase proceeds via environmentally coupled hydride tunneling. We present here a computational analysis of this hydride transfer reaction using QM/MM molecular dynamics simulations and variational transition-state theory calculations. Our calculated primary and secondary KIEs are in good agreement with the corresponding experimental values. Although the experimentally observed KIE lies below the semiclassical limit, our calculations suggest that approximately 99% of the reaction proceeds via tunneling: this is the first "deep tunneling" reaction observed for hydride transfer. We also show that the dominant tunneling mechanism is controlled by the isotope at the primary rather than the secondary position: with protium in the primary position, large-curvature tunneling dominates, whereas with deuterium in this position, small-curvature tunneling dominates. Also, our study is consistent with tunneling being preceded by reorganization: in the reactant, the rings of the nicotinamide and isoalloxazine moieties are stacked roughly parallel to each other, and as the system moves toward a "tunneling-ready" configuration, the nicotinamide ring rotates to become almost perpendicular to the isoalloxazine ring.     

Prediction of the binding sites of huperzine A in acetylcholinesterase by docking studies

Summary We have performed docking studies with the SYSDOC program on acetylcholinesterase (AChE) to predict the binding sites in AChE of huperzine A (HA), which is a potent and selective, reversible inhibitor of AChE. The unique aspects of our docking studies include the following: (i) Molecular flexibility of the guest and the host is taken into account, which permits both to change their conformations upon binding. (ii) The binding energy is evaluated by a sum of energies of steric, electrostatic and hydrogen bonding interactions. In the energy calculation no grid approximation is used, and all hydrogen atoms of the system are treated explicitly. (iii) The energy of cation- interactions between the guest and the host, which is important in the binding of AChE, is included in the calculated binding energy. (iv) Docking is performed in all regions of the host's binding cavity. Based on our docking studies and the pharmacological results reported for HA and its analogs, we predict that HA binds to the bottom of the binding cavity of AChE (the gorge) with its ammonium group interacting with Trp⁸⁴, Phe³³⁰, Glu¹⁹⁹ and Asp⁷² (catalytic site). At the the opening of the gorge with its ammonium group partially interacting with Trp²⁷⁹ (peripheral site). At the catalytic site, three partially overlapping subsites of HA were identified which might provide a dynamic view of binding of HA to the catalytic site.     

Synthesis of coumestan derivatives via FeCl3-mediated oxidative ring closure of 4-hydroxy coumarins

A concise and efficient approach to the syntheses of coumestan analogues has been developed. The underpinning strategy involves a FeCl(3)-mediated direct intramolecular oxidative annellation of 4-hydroxy-3-phenyl-2H-chromen-2-one derivatives. Utilizing this synthetic protocol, a variety of coumestan derivatives were conveniently obtained from readily available reagents.     

Ab initio study of spectroscopic constants and anharmonic force field of 74GeCl2

The equilibrium structure, spectroscopy constants, and anharmonic force field of germanium dichloride have been calculated at MP2, B3LYP, and CCSD(T) levels of theory employing two basis sets, cc-pVDZ and cc-pVTZ, respectively. The computed geometries, rotational constants, and vibration-rotation interaction constants, and quartic centrifugal distortion constants are compared with the available experimental data. The harmonic frequencies, anharmonic constants, and cubic and quartic force constants are predicted. The calculated results show that the MP2 results are in excellent agreement with experiment and represent a substantial improvement over the results obtained from B3LYP. The CCSD(T) method is also an advisable choice to study anharmonic force field of molecules.     

Adsorption, vibration, and diffusion of O atoms on Rh low-index and (711) stepped defective surfaces

The adsorption, vibration, and diffusion of O atoms on Rh(100), Rh(111), Rh(110), and Rh(711) surfaces were studied using the 5-parameter Morse potential (5-MP) of interaction between an adatom and a metal surface cluster. Our theoretical calculations provide information about adsorption sites, adsorption geometry, binding energy, and eigenvibration. Our results agreed very well with experimental results. Four major results follow. First, the theoretical calculation showed that on the Rh(100) surface the 4-fold hollow site is the only adsorption site. Second, on the O-Rh(111) system, the 3-fold hollow site is the stable adsorption site. Third, on the Rh(110) surface at low coverage, the O atom is adsorbed preferably on the pseudo-3-fold site, while with increasing coverage, the O atom is adsorbed not only on the pseudo-3-fold site but also on the long bridge site. Last, as for the Rh(711) stepped surface, the 3-fold site on the (111) step is metastable, whereas the 4-fold sites on the (100) terrace are stable, which enables the O atoms to diffuse easily from the 3-fold to the 4-fold site at low coverage. Therefore, the O atoms are adsorbed preferrably on the stable 4-fold sites of the (100) terrace and then later as coverage increases on the metastable 3-fold site of the (110) step.     

Development of wavelet transform voltammetric analyzer

An on-line wavelet transform algorithm and development of voltammetric analyzer with the on-line wavelet transform (WT-voltammetric analyzer) are described. Because the on-line wavelet transform decomposes the sampled signal simultaneously with the progress of sampling, the WT-voltammetric analyzer gives all the components contained in the sampled voltammogram. Applications of the WT-voltammetric analyzer in linear sweep voltammetric analysis of mixtures of Pb(II) and Tl(I) and in square wave voltammetric analysis of mixture of Cd(II) and In(III) were investigated. Results showed that the overlapping peaks of Pb(II) and Tl(I) can be separated easily, and the peak position after the on-line wavelet transform does not change. The linearity of the calibration curves for Cd(II) and In(III) in the overlapping square wave voltammetric curves were kept after the on-line wavelet transform. Quantitative determination of Cd(II) and In(III) in mixture samples were investigated. The recoveries are between 92.5 and 107.1%.     

Determination of clopidol residues in chicken tissues by high-performance liquid chromatography-mass spectrometry

A high-performance liquid chromatographic-mass spectrometric (HPLC-MS) method has been developed for determination of clopidol residues in chicken tissues. Samples are extracted with acetonitrile. The extracts are cleaned up on an alumina column followed by an anion-exchange column. The clopidol is separated on a column (150 cmx4.6 mm) of Intertsil by using acetonitrile-water (20:80) as mobile phase. The clopidol was qualitatively identified by molecule mass and determined quantitatively by selected ion monitoring mode at 190 m/z. The recoveries with RSDs ranged from 91.6+/-10.1 to 97.3+/-5.7 at 0.010 to 10.0 mg/kg by spiking three matrices (chicken muscle, liver, and kidney). The limit of detection was 0.005 mg/kg, and the limit of quantification was 0.010 mg/kg.